Bio-X² resources pages

Please note that those page are currently being written. Documentation is a work in progress, and will be completed and updated continuously. For any question or suggestion about this documentation, please contact Kilian Cavalotti (kilian at stanford dot edu)

News

See the News section for the latest information about the cluster (a RSS feed is also available). To get a list of the current problems reported on the cluster, see the Bio-X² current issues page.

Participate in our presentation at the Supercompute '08 Conference.

Cluster status^new!

• Cluster status (jobs statistics, cluster load)
• Infiniband fabric status

Local resources

The following links are a tentative to give an overview of the Bio-X² cluster organization, and to give as much useful information as possible regarding its usage. Users are welcomed and encouraged to browse through those pages to get familiar with the Bio-X² environment.

• Access
  • Getting an account
  • Connecting to the cluster
• Administrative information
  • Pricing information
  • Users profile page
• Hardware
  • Technical summary
  • Gallery
• Running Jobs
  • LSF Quick Start
  • Submit and manage jobs
  • Run parallel jobs (MPI)
  • Scheduler queues
• Network
  • Reading your email on Bio-X²
  • Using CVS or Subversion
• Storage
  • Lustre, quotas, stripping
• User Submitted Guides
  • Tools, code, and suggestions to add functionality

• Frequently Asked Questions

Vendor resources

Hardware

• Dell
  • PowerEdge 1950
  • PowerVault MD1000
  • PowerVault MD3000
  • PowerConnect 6248
• Intel
  • Intel Xeon processor (Clovertown E5345)
• Cisco
  • Cisco Infiniband
  • SFS 7024D InfiniBand Server Switch
  • SFS 7000D InfiniBand Server Switch
  • Host Channel Adapter

Software

• Cluster File Systems
  • Lustre
• Platform
  • LSF HPC
  • Open Cluster Stack
• Redhat
• Intel
  • C++ compiler
  • Fortran compiler
  • MPI library
  • Math kernel library
  • Trace Analyzer and Collector
  • VTune Analyzer